The intrinsic correlation between the fracture morphlogy evolution and the structural heterogeneity of flow units in a typical Zr52.5Ti5Cu17.9Ni14.6Al10 (vit105) metallic glass upon annealing was investigated. By systematically tuning the annealing time at temperature below the glass transition temperature, a series of dimple-like fracture morphology were obtained, which is the unique fingerprint-like pattern for every annealing state. Based on the structural relaxation model of flow units, the evolution of the typical dimple sizes, the largest and smallest dimple size, with annealing were well fitted. Then the evolution of flow unit density was estimated from the fracture morphology evolution, which displays the same evolution trend with that measured from thermal relaxation. The work may provide a novel scheme to investigate the structural fingerprint information on flow units from fracture morphology, and enlighten the microscopic structural origin of the ductile-to-brittle transition during structural relaxation in metallic glasses.